- t_coffee -other_pg seq_reformat -in full_dataset.aln -action +rm_gap 1
- t_coffee -other_pg seq_reformat -in full_dataset.aln -action +evaluate idmat +keep '[5-9]' +rm_gap 100
- t_coffee -other_pg seq_reformat -in full_dataset.aln -output sim | grep AVG | sort -nk5
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