T-COFFEE, Version_9.01.r1156 (2011-11-25 16:46:05 - Revision 1156 - Build 321)
Cedric Notredame
CPU TIME:0 sec.
SCORE=93
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BAD AVG GOOD
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TNF1 : 93
TNF2 : 93
TNF4 : 92
TNF5 : 92
TNF10 : 94
TNF11 : 94
TNF13 : 93
TNF13B : 93
TNF15 : 93
TNF18 : 92
EDA-A1 : 93
EDA-A2 : 93
C1QA : 92
C1QB : 93
C1QC : 93
ADIPO : 93
CO8A1 : 93
COAA1 : 93
cons : 93
TNF1 KPAAHLIGD-PSK-------Q--------NSLLWRANTDR-----AFLQD-GFSLS--NNSLLVPTSGIYFVYSQVVFSGKAY------SPKATSSPLYLAHEVQLFSSQY----PFH-VPLLSSQKMVYPG------LQE--P-WLHSMYHG
TNF2 MPVAHVVAN-PQA-------E--------GQLQWLNRRAN-----ALLAN-GVELR--DNQLVVPSEGLYLIYSQVLFKGQGC----------PSTHVLLTHTISRIAVSY----Q-TKVNLLSAIKSPCQRETPEGAEAK--P-WYEPIYLG
TNF4 IQSIKVQFT-EY----------------KKEKGFI---LT-----SQKEDEIMKVQ--NNSVIINCDGFYLISLKGYFSQ------------------EVNISLHYQK--------D-EEPLFQLKK-------------------VRSVNSL
TNF5 QIAAHVISEASSKT------T--------SVLQWAE-KGY-----YTMSNNLVTLE-NGKQLTVKRQGLYYIYAQVTFCSNRE------A----SSQAPFIASLCLKSPGR-----FE-RILLRAANTHSSA-------KP--C-GQQSIHLG
TNF10 RVAAHITGT-RGRSNTLSSPNSKNEKALGRKINSW---ESSRSGHSFLS--NLHLR--NGELVIHEKGFYYIYSQTYFRFQEE------IKENTKNDKQMVQYIYKYTS-Y----PD-PILLMKSARNSC-----WSKDAE--Y-GLYSIYQG
TNF11 QPFAHLTIN-ATDIP---------SGSHKVSLSSW---YHD-RGWAKIS--NMTFS--NGKLIVNQDGFYYLYANICFRHHET------SGDLATEYLQLMVYVTKTSIKI----PS-SHTLMKGGSTKY-----WSGNSE--F-HFYSINVG
TNF13 HSVLHLVPI-NAT-------S--KDDSDVTEVMW----QP-----ALRRGRGLQAQ--GYGVRIQDAGVYLLYSQVLFQDV---------------TFTMGQVVSREGQGR------Q-ETLFRCIRSMP----------SHPDRAYNSCYSA
TNF13B QDCLQLIAD-SE-------TP--TIQKGSYTFVPW---LL-----SFKRGSALEEK--ENKILVKETGYFFIYGQVLYTD---------------KTYAMGHLIQRKKVHVFGDELS-LVTLFRCIQNMP-----E----T--L-PNNSCYSA
TNF15 KPRAHLTVVR-QT-------PTQHFKNQFPALHWE---HE--LGLAFTKN-RMNYT--NKFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVVITKVTDSY----PE-PTQLLMGTKSVCE-----V--GS---NWFQPIYLG
TNF18 PCMAKFGPL--------------------P---SKW-QMA-----SSEPP-CVNKV-SDWKLEILQNGLYLIYGQVAPNANY------------NDVAPFEVRLYKNK-----------DMIQTLTNK------------------SKIQNVG
EDA-A1 PAVVHLQGQ-GS-------AIQVKNDLSGGVLNDW---SR-----ITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYY-------------INFTDFASYEVVVD-----------EKPFLQCTRSIE-----TG---K--T-NYNTCYTA
EDA-A2 PAVVHLQGQ-GS-------AIQVKNDLSGGVLNDW---SR-----ITMNPKVFKLHPRSGELEVLVDGTYFIYSQVYYIN---------------FTDFASYEVVVD-----------EKPFLQCTRSIE-----TG---K--T-NYNTCYTA
C1QA RPAFSAIRR-NP-------------PMGGNVVIFD---TV-----ITNQEEPYQNH--SGRFVCTVPGYYYFTFQVLSQ------------------WEICLSIVSSSRG------Q-VRRSLGFCDTTN----------K---GLFQVVSGG
C1QB KIAFSATRT-INV-----------PLRRDQTIRFD---HV-----ITNMNNNYEPR--SGKFTCKVPGLYYFTYHASSR------------------GNLCVNLMRGRE-------R-AQKVVTFCDYAY--------------NTFQVTTGG
C1QC QSVFTVTRQ-THQ-----------PPAPNSLIRFN---AV-----LTNPQGDYDTS--TGKFTCKVPGLYYFVYHASHT------------------ANLCVLLYRS-----------GVKVVTFCGHTS--------------KTNQVNSGG
ADIPO RSAFSVGLE-TR------------VTVPNVPIRFT---KI-----FYNQQNHYDGS--TGKFYCNIPGLYYFSYHITVYM-----------------KDVKVSLFKK-----------DKAVLFTYDQYQ----------E---KNVDQASGS
CO8A1 MPAFTAELT-VP------------FPPVGAPVKFD---KL-----LYNGRQNYNPQ--TGIFTCEVPGVYYFAYHVHCKG-----------------GNVWVALFKN-----------NEPMMYTYDEYK----------K---GFLDQASGS
COAA1 VSAFTVILS-KA------------YPAVGAPIPFD---EI-----LYNRQQHYDPR--SGIFTCKIPGIYYFSYHVHVKG-----------------THVWVGLYKN-----------GTPTMYTYDEYS----------K---GYLDQASGS
cons . * : . : :
TNF1 AAFQLTQGDQLSTHTDGIP---HLVL-SPSTVFFGAFAL
TNF2 GVFQLEKGDRLSAEINRPD---YLDFAESGQVYFGIIAL
TNF4 MVASLTYKDKVYLNVTTDN--TSLDDFHVNGGELILIHQ
TNF5 GVFELQPGASVFVNVTDPS---QVSH-GTGFTSFGLLKL
TNF10 GIFELKENDRIFVSVTNEH---LID-MDHEASFFGAFLV
TNF11 GFFKLRSGEEISIEVSNPS---LLD-PDQDATYFGAFKV
TNF13 GVFHLHQGDILSVIIPRAR--AKLNL-SPHGTFLGFVKL
TNF13B GIAKLEEGDELQLAIPREN--AQIS-LDGDVTFFGALKL
TNF15 AMFSLQEGDKLMVNVSDIS---LVDYTKEDKTFFGAFLL
TNF18 GTYELHVGDTIDLIFNSEH---QVLK---NNTYWGIILL
EDA-A1 GVCLLKARQKIAVKMVHAD--ISIN-MSKHTTFFGAIRL
EDA-A2 GVCLLKARQKIAVKMVHAD--ISIN-MSKHTTFFGAIRL
C1QA MVLQLQQGDQVWVEKDPK--KGHIYQGSEADSVFSGFLI
C1QB MVLKLEQGENVFLQATDK---NSLLGMEGANSIFSGFLL
C1QC VLLRLQVGEEVWLAVNDY---YDMVGIQGSDSVFSGFLL
ADIPO VLLHLEVGDQVWLQVYGDGDHNGLYADNVNDSTFTGFLL
CO8A1 AVLLLRPGDQVFLQMPSEQ-AAGLYAGQYVHSSFSGYLL
COAA1 AIMELTENDQVWLQLPNAE-SNGLYSSEYVHSSFSGFLV
cons * : :