A-

-make a list_file of the corresponding sequences
-use pileup to produce the multiple sequence alignment
-use the program figure to turn your .figure file into an .eps file that you can view/print with ghostview

B-

-Xenope and Human?

C-

use blast and pileup

D-

-mouse and human?
-look at the multiple sequence alignment.

E-

-get the full swissprot entries and identify (when possible the corresponding EMBL entry)
-align the EMBL entries, but restrict your alignment to the coding portions.

F-

-use distances with kimura.
-use the UGMP algorithm in growtree

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