Legend:
- means that the alignment score was below the threshold on the previous iteration
- means that the alignment was checked on the previous iteration
Hit list size
Sequences with E-value BETTER than threshold
Score E
Sequences producing significant alignments: (bits) Value
gi|6678613|ref|NP_033558.1| X-ray repair complementing defective... 145 1e-35
gi|5454172|ref|NP_006288.1| X-ray repair cross complementing pro... 145 1e-35
gi|730470|sp|P32372|RAD4_SCHPO S-M CHECKPOINT CONTROL PROTEIN RA... 102 1e-22
Sequences with E-value WORSE than threshold
gi|5921762|sp|O74161|CHS5_CANAL CHITIN BIOSYNTHESIS PROTEIN CHS5... 35 0.020
gi|1723501|sp|Q10337|YBM5_SCHPO HYPOTHETICAL 98.4 KDA PROTEIN C5... 33 0.072
gi|118778|sp|P28719|DNLJ_ZYMMO DNA LIGASE (POLYDEOXYRIBONUCLEOTI... 31 0.30
gi|7674016|sp|Q9WXV5|DNLJ_THEMA DNA LIGASE (POLYDEOXYRIBONUCLEOT... 31 0.33
gi|6681261|ref|NP_031926.1| ect2 oncogene [Mus musculus] >gi|601... 31 0.40
gi|2842702|sp|Q92357|CHS5_SCHPO PROBABLE CHITIN BIOSYNTHESIS PRO... 30 0.83
gi|14285678|sp|Q9HXW7|PLSB_PSEAE GLYCEROL-3-PHOSPHATE ACYLTRANSF... 30 0.87
gi|7674019|sp|Q9ZHI0|DNLJ_THEFI DNA LIGASE (POLYDEOXYRIBONUCLEOT... 29 1.1
gi|6323933|ref|NP_014004.1| TFIIF interacting component of CTD p... 29 1.1
gi|6225281|sp|Q9ZCK9|DNLJ_RICPR DNA LIGASE (POLYDEOXYRIBONUCLEOT... 29 2.0
gi|7674017|sp|Q9Z585|DNLJ_STRCO DNA LIGASE (POLYDEOXYRIBONUCLEOT... 28 2.5
gi|1352293|sp|P49422|DNLJ_THESC DNA LIGASE (POLYDEOXYRIBONUCLEOT... 28 2.9
gi|118780|sp|P26996|DNLJ_THETH DNA LIGASE (POLYDEOXYRIBONUCLEOTI... 28 2.9
gi|2506362|sp|P15042|DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOT... 28 3.1
gi|4504997|ref|NP_002303.1| DNA ligase IV [Homo sapiens] >gi|170... 28 4.4
gi|7674018|sp|Q9ZFY8|DNLJ_THESK DNA LIGASE (POLYDEOXYRIBONUCLEOT... 27 6.0
gi|11132251|sp|P57172|DNLJ_BUCAI DNA LIGASE (POLYDEOXYRIBONUCLEO... 27 7.4
gi|6322371|ref|NP_012445.1| DNA polymerase II complex; Dpb11p [S... 26 8.0
gi|3182983|sp|O25336|DNLJ_HELPY DNA LIGASE (POLYDEOXYRIBONUCLEOT... 26 8.8
gi|2500887|sp|Q99150|SR54_YARLI SIGNAL RECOGNITION PARTICLE 54 K... 26 9.9
Alignments
>gi|6678613|ref|NP_033558.1| X-ray repair complementing defective repair in Chinese hamster
cells 1 [Mus musculus]
gi|2499137|sp|Q60596|XRC1_MOUSE DNA-REPAIR PROTEIN XRCC1
gi|627867|pir||A54659 DNA repair protein Xrcc-1 - mouse
gi|409953|gb|AAA93115.1| (U02887) DNA repair protein [Mus musculus]
Length = 631
Score = 145 bits (367), Expect = 1e-35
Identities = 72/73 (98%), Positives = 72/73 (98%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT DSTHLICAFANTPKYSQVLGLG
Sbjct: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLG 377
Query: 61 GRIVRKEWVLDCH 73
GRIVRKEWVLDCH
Sbjct: 378 GRIVRKEWVLDCH 390
>gi|5454172|ref|NP_006288.1| X-ray repair cross complementing protein 1; X-ray-repair,
complementing defective, repair in Chinese hamster; DNA
repair protein XRCC1 [Homo sapiens]
gi|139820|sp|P18887|XRC1_HUMAN DNA-REPAIR PROTEIN XRCC1
gi|105855|pir||A36353 DNA repair protein XRCC1 - human
gi|340397|gb|AAA63270.1| (M36089) DNA-repair protein [Homo sapiens]
Length = 633
Score = 145 bits (366), Expect = 1e-35
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG
Sbjct: 318 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 377
Query: 61 GRIVRKEWVLDCH 73
GRIVRKEWVLDCH
Sbjct: 378 GRIVRKEWVLDCH 390
>gi|730470|sp|P32372|RAD4_SCHPO S-M CHECKPOINT CONTROL PROTEIN RAD4 (CUT5 PROTEIN) (P74)
gi|7490404|pir||B40727 S-M checkpoint control protein Rad4p - fission yeast
(Schizosaccharomyces pombe)
gi|7493353|pir||T38273 S-M checkpoint control protein Rad4p - fission yeast
(Schizosaccharomyces pombe)
gi|409171|dbj|BAA04048.1| (D16627) ORF [Schizosaccharomyces pombe]
gi|433848|emb|CAA44548.1| (X62676) rad4 [Schizosaccharomyces pombe]
gi|4160356|emb|CAB16889.1| (Z99753) S-M checkpoint control protein Rad4p
[Schizosaccharomyces pombe]
Length = 648
Score = 102 bits (254), Expect = 1e-22
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
K L+G V+ + R+E+ KA +LGA YR D+T+D THLI +TPKY
Sbjct: 5 KPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSR 64
Query: 61 --GRIVRKEWV 69
+I+ EW+
Sbjct: 65 PDIKIMSSEWI 75
Score = 72.6 bits (177), Expect = 9e-14
Identities = 22/62 (35%), Positives = 31/62 (49%)
Query: 8 VVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKE 67
V L+ P RS + + L+ G + PD TRD THLI ++ KY L +V E
Sbjct: 107 VCLTNIGQPERSRIENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVVCVE 166
Query: 68 WV 69
W+
Sbjct: 167 WL 168
>gi|5921762|sp|O74161|CHS5_CANAL CHITIN BIOSYNTHESIS PROTEIN CHS5
gi|3551165|dbj|BAA32787.1| (AB012123) Chs5p [Candida albicans]
Length = 562
Score = 35.3 bits (80), Expect = 0.020
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 3 LQGVVVVLSGF--QNPFRSELRDKALE-LGAKY--RPDWTRDSTHLICAFAN--TPKYSQ 55
L G+ V L + F E ++AL+ +GAKY + D+TH +C N P+Y +
Sbjct: 169 LSGITVCLGDLTPNDQFNKEDIEEALKNMGAKYPVQQQVKVDTTHFLCTRENKQNPEYVK 228
Query: 56 VLGLGGRIVRKEWVLDC 72
+ I+R EW+ C
Sbjct: 229 ANDMNIPIIRPEWLKAC 245
>gi|1723501|sp|Q10337|YBM5_SCHPO HYPOTHETICAL 98.4 KDA PROTEIN C582.05C IN CHROMOSOME II
gi|7491703|pir||T40564 hypothetical protein SPBC582.05c - fission yeast
(Schizosaccharomyces pombe)
gi|7492208|pir||T37978 multiple BRCT domain containing protein - fission yeast
(Schizosaccharomyces pombe)
gi|1216247|emb|CAA93789.1| (Z69909) multiple BRCT domain containing protein
[Schizosaccharomyces pombe]
gi|5420441|emb|CAB46668.1| (AL096788) BRCT domain protein; (cell-cycle checkpoint
superfamily) [Schizosaccharomyces pombe]
Length = 878
Score = 33.3 bits (75), Expect = 0.072
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 6/71 (8%)
Query: 7 VVVLSGFQNPFRSELRDKALEL-----GAKYRPDWTRDSTHLICAFANTPKYSQVLGLGG 61
VV P ++ELR K L + + DW + +TH+IC ++P +
Sbjct: 21 VVAYYSALQPNQNELRKKELFIKNDGKALSFPYDW-KLATHVICDDFSSPNVQEGSKRSL 79
Query: 62 RIVRKEWVLDC 72
R+ + W+ DC
Sbjct: 80 RLAKTNWIRDC 90
Score = 31.0 bits (69), Expect = 0.39
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+ +V ++ + + R L L GA Y D +T LI A + KY
Sbjct: 316 LKDQMVAVTNYTDAARIYLEKLLLACGATYTKDLKPTNTLLIAASSYGQKYGAAKVWNIP 375
Query: 63 IVRKEWV 69
V W+
Sbjct: 376 TVHHSWL 382
Score = 29.1 bits (64), Expect = 1.2
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Query: 8 VVLSGFQ-NPFRSELRDKALE-LGAKYRPDWTRDSTHLICAFANTPKYSQVL---GLGGR 62
+ S Q + ++S L D ALE G ++ + THL K +VL L +
Sbjct: 113 ICASSCQIDSYQSSLIDDALETFGGRFSKGLMKSMTHLFTYSGMGAKCKKVLDKPSLSIK 172
Query: 63 IVRKEWVLDC 72
++ +W+LDC
Sbjct: 173 LIHPQWLLDC 182
>gi|118778|sp|P28719|DNLJ_ZYMMO DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|95536|pir||S20687 DNA ligase (NAD+) (EC 6.5.1.2) - Zymomonas mobilis
gi|49284|emb|CAA77966.1| (Z11910) DNA ligase [Zymomonas mobilis]
gi|11095423|gb|AAG29863.1|AF313764_6 (AF313764) DNA ligase [Zymomonas mobilis]
gi|382210|prf||1819268B DNA ligase [Zymomonas mobilis]
Length = 731
Score = 31.4 bits (70), Expect = 0.30
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
L G ++V +G Q R E + +A LGAK ++ + ++ A K S+ L
Sbjct: 649 PLSGKIIVFTGSLQKITRDEAKRQAENLGAKVASSVSKKTNLVVAGEAAGSKLSKAKELD 708
Query: 61 GRIV 64
I+
Sbjct: 709 ISII 712
>gi|7674016|sp|Q9WXV5|DNLJ_THEMA DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438171|pir||D72418 DNA ligase - Thermotoga maritima (strain MSB8)
gi|4980590|gb|AAD35194.1|AE001696_8 (AE001696) DNA ligase [Thermotoga maritima]
Length = 688
Score = 31.0 bits (69), Expect = 0.33
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
IL+G+ ++G +N R E+ + +LGAK +R++ +LI KY + L
Sbjct: 594 ILRGLTFAVTGTLKNFTREEIIEFLEKLGAKVVNSVSRNTDYLIVGENPGSKYERAKMLK 653
Query: 61 GRIVRKEWVLD 71
+++ +E L+
Sbjct: 654 VKMMSEEEFLE 664
>gi|6681261|ref|NP_031926.1| ect2 oncogene [Mus musculus]
gi|6015052|sp|Q07139|ECT2_MOUSE ECT2 PROTEIN (ECT2 ONCOGENE)
gi|423597|pir||S32372 transforming protein (ect2) - mouse
gi|293332|gb|AAA37536.1| (L11316) ect2 [Mus musculus]
gi|446401|prf||1911407A oncogene ect2 [Mus musculus]
Length = 738
Score = 30.6 bits (68), Expect = 0.40
Identities = 15/64 (23%), Positives = 27/64 (41%), Gaps = 1/64 (1%)
Query: 7 VVVLSGFQNPFR-SELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVR 65
V+ +GF+ +L +G R + THL+ K+ + LG I++
Sbjct: 5 VLCFTGFRKKEELVKLVTLVHHMGGVIRKECNSKVTHLVANCTQGEKFRVAVSLGTPIMK 64
Query: 66 KEWV 69
EW+
Sbjct: 65 PEWI 68
>gi|2842702|sp|Q92357|CHS5_SCHPO PROBABLE CHITIN BIOSYNTHESIS PROTEIN C6G9.12 (CHS5 HOMOLOG)
gi|7493727|pir||T39074 yeast chs5 homologfibronectin type III domain protein - fission
yeast (Schizosaccharomyces pombe)
gi|1644324|emb|CAB03614.1| (Z81317) fibronectin type III domain protein; yeast chs5 homolog
[Schizosaccharomyces pombe]
Length = 620
Score = 29.9 bits (66), Expect = 0.83
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 39 DSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDC 72
D+TH IC+ P+Y + I+ +++L C
Sbjct: 209 DTTHFICSSTGGPEYEKAKAANIPILGLDYLLKC 242
>gi|14285678|sp|Q9HXW7|PLSB_PSEAE GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE (GPAT)
gi|11348627|pir||F83185 glycerol-3-phosphate acyltransferase PA3673 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gi|9949836|gb|AAG07061.1|AE004787_1 (AE004787) glycerol-3-phosphate acyltransferase [Pseudomonas
aeruginosa]
Length = 834
Score = 29.9 bits (66), Expect = 0.87
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 27 ELGAKYRPDWTRDSTHLICAF 47
+LG +YRPDW +T+L+
Sbjct: 495 DLGPEYRPDWLPQTTNLLAKD 515
>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
Length = 670
Score = 29.5 bits (65), Expect = 1.1
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L G+ VL+G + R E++ LGAK +R +++L+ K + LG
Sbjct: 591 LSGLTFVLTGELSRPREEVKALLQRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVA 650
Query: 63 IVRKE 67
++ +E
Sbjct: 651 VLTEE 655
>gi|6323933|ref|NP_014004.1| TFIIF interacting component of CTD phosphatase; Fcp1p
[Saccharomyces cerevisiae]
gi|2497216|sp|Q03254|YM8K_YEAST HYPOTHETICAL 83.4 KD PROTEIN IN DSK2-CAT8 INTERGENIC REGION
gi|1078533|pir||S54584 hypothetical protein YMR277w - yeast (Saccharomyces cerevisiae)
gi|825543|emb|CAA89775.1| (Z49704) unknown [Saccharomyces cerevisiae]
Length = 732
Score = 29.5 bits (65), Expect = 1.1
Identities = 16/58 (27%), Positives = 24/58 (40%), Gaps = 2/58 (3%)
Query: 17 FRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL--GGRIVRKEWVLDC 72
RS++ GA PD +THLI +T K +IV +W+ +C
Sbjct: 522 QRSDIVIWTSTFGATSTPDIDYLTTHLITKNPSTYKARLAKKFNPQIKIVHPDWIFEC 579
>gi|6225281|sp|Q9ZCK9|DNLJ_RICPR DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7438172|pir||G71631 DNA ligase (lig) RP720 - Rickettsia prowazekii
gi|3861252|emb|CAA15151.1| (AJ235273) DNA LIGASE (lig) [Rickettsia prowazekii]
Length = 689
Score = 28.7 bits (63), Expect = 2.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
IL G +VV +G R E ++ A +LGAK + ++ +I K + L
Sbjct: 614 ILTGKIVVFTGSLSTISRVEAKEIAEKLGAKVTASVSLNTDLVIAGVNGGSKLKKAKELN 673
Query: 61 GRIV-RKEWV 69
+I+ EW+
Sbjct: 674 IKIIDEVEWL 683
>gi|7674017|sp|Q9Z585|DNLJ_STRCO DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7480624|pir||T35810 probable DNA ligase - Streptomyces coelicolor
gi|4467245|emb|CAB37570.1| (AL035569) putative DNA ligase [Streptomyces coelicolor A3(2)]
Length = 735
Score = 28.3 bits (62), Expect = 2.5
Identities = 14/65 (21%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Query: 1 KILQGVVVVLSGFQNPFRSELRDKALE-LGAKYRPDWTRDSTHLICAFANTPKYSQVLGL 59
+ L+G+ VV++G F + +AL+ GAK ++ ++ ++ KY + + L
Sbjct: 646 RPLEGLTVVVTGTLENFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQL 705
Query: 60 GGRIV 64
++
Sbjct: 706 KVPVL 710
>gi|1352293|sp|P49422|DNLJ_THESC DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|1085749|pir||S52240 DNA ligase (NAD+) (EC 6.5.1.2) - Thermus scotoductus
gi|609276|emb|CAA82645.1| (Z29528) DNA ligase [Thermus scotoductus]
gi|1093606|prf||2104272A DNA ligase [Thermus scotoductus]
Length = 674
Score = 27.9 bits (61), Expect = 2.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R +++L+ K + LG
Sbjct: 591 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVP 650
Query: 63 IVRKE 67
+ +E
Sbjct: 651 TLTEE 655
>gi|118780|sp|P26996|DNLJ_THETH DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|94721|pir||A40363 DNA ligase (NAD+) (EC 6.5.1.2) - Thermus aquaticus
gi|155088|gb|AAA27486.1| (M74792) DNA ligase [Thermus thermophilus]
gi|155090|gb|AAA27487.1| (M36417) DNA ligase [Thermus thermophilus]
Length = 676
Score = 27.9 bits (61), Expect = 2.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R +++L+ K + LG
Sbjct: 594 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVP 653
Query: 63 IVRKE 67
+ +E
Sbjct: 654 TLTEE 658
>gi|2506362|sp|P15042|DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428519|pir||LQECC6 DNA ligase (NAD+) (EC 6.5.1.2) - Escherichia coli
gi|146613|gb|AAA24070.1| (M24278) DNA ligase (EC 6.5.1.2) [Escherichia coli]
gi|1788750|gb|AAC75464.1| (AE000328) DNA ligase [Escherichia coli K12]
Length = 671
Score = 27.9 bits (61), Expect = 3.1
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 2 ILQGVVVVLSG-FQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLG 60
G VVL+G R + + + +ELGAK ++ + +I A K ++ LG
Sbjct: 597 PFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELG 656
Query: 61 GRIV 64
++
Sbjct: 657 IEVI 660
>gi|4504997|ref|NP_002303.1| DNA ligase IV [Homo sapiens]
gi|1706482|sp|P49917|DNL4_HUMAN DNA LIGASE IV (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP])
gi|7512395|pir||I37079 DNA ligase (ATP) (EC 6.5.1.1) IV - human
gi|860937|emb|CAA58467.1| (X83441) DNA ligase IV [Homo sapiens]
Length = 844
Score = 27.6 bits (60), Expect = 4.4
Identities = 14/64 (21%), Positives = 29/64 (44%)
Query: 9 VLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEW 68
V+SG + + +L ++ E G + D+ +I N + +L +V+ W
Sbjct: 599 VMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAW 658
Query: 69 VLDC 72
+L+C
Sbjct: 659 LLEC 662
>gi|7674018|sp|Q9ZFY8|DNLJ_THESK DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|4235370|gb|AAD13188.1| (AF092862) NAD-dependent DNA ligase [Thermus sp. AK16D]
Length = 674
Score = 26.8 bits (58), Expect = 6.0
Identities = 16/65 (24%), Positives = 30/65 (45%)
Query: 3 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR 62
L+G+ V++G + R E++ LGAK +R ++ L+ K + LG
Sbjct: 591 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSFLVVGENPGSKLEKARALGVP 650
Query: 63 IVRKE 67
+ +E
Sbjct: 651 TLSEE 655
>gi|11132251|sp|P57172|DNLJ_BUCAI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|10038755|dbj|BAB12790.1| (AP001118) DNA ligase (NAD+) [Buchnera sp. APS]
Length = 675
Score = 26.8 bits (58), Expect = 7.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 VVLSGFQNPF-RSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRK 66
+VL+G F R EL+ L LGAK + +R + LI K+ + L +I+ +
Sbjct: 605 IVLTGVFKSFSRIELKTILLSLGAKISNNISRKTDFLIYGNNFGSKFFRAKDLDVKIINQ 664
Query: 67 E 67
E
Sbjct: 665 E 665
>gi|6322371|ref|NP_012445.1| DNA polymerase II complex; Dpb11p [Saccharomyces cerevisiae]
gi|1352999|sp|P47027|YJJ0_YEAST HYPOTHETICAL 87.2 KD PROTEIN IN SRS2-SIP4 INTERGENIC REGION
gi|1077825|pir||S56017 DPB11 protein - yeast (Saccharomyces cerevisiae)
gi|929863|emb|CAA58477.1| (X83502) J0918 [Saccharomyces cerevisiae]
gi|1008260|emb|CAA89383.1| (Z49365) ORF YJL090c [Saccharomyces cerevisiae]
Length = 764
Score = 26.4 bits (57), Expect = 8.0
Identities = 15/66 (22%), Positives = 26/66 (38%), Gaps = 2/66 (3%)
Query: 1 KILQGVVVVLSGFQNP-FRSELRDKALELGAKYRPDWTRDSTHLICAF-ANTPKYSQVLG 58
K QG+ + N ++ K ++LG + D TR L+ NT K+ +
Sbjct: 2 KPFQGITFCPTAINNEILAKKISKKIIKLGGIFSKDLTRQVNVLVVGSTTNTNKFKFAVK 61
Query: 59 LGGRIV 64
I+
Sbjct: 62 HRFDII 67
>gi|3182983|sp|O25336|DNLJ_HELPY DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])
gi|7428522|pir||G64596 DNA ligase (NAD+) (EC 6.5.1.2) - Helicobacter pylori (strain 26695)
gi|2313737|gb|AAD07680.1| (AE000576) DNA ligase (lig) [Helicobacter pylori 26695]
Length = 656
Score = 26.4 bits (57), Expect = 8.8
Identities = 15/63 (23%), Positives = 25/63 (38%)
Query: 8 VVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKE 67
+VL+G + R E LGAK + + LI K + G ++ +E
Sbjct: 587 IVLTGTLSKPRQEYAQMLENLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLNEE 646
Query: 68 WVL 70
+L
Sbjct: 647 ELL 649
>gi|2500887|sp|Q99150|SR54_YARLI SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG (SRP54)
gi|1147795|gb|AAC49735.1| (U42418) Srp54p [Yarrowia lipolytica]
Length = 536
Score = 26.0 bits (56), Expect = 9.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 6 VVVVLSGFQNPFRSELRDKALELGAKYRPDWT 37
+++V + ++ SEL + +++GA +PD T
Sbjct: 188 IIIVDTSGRHRQESELFTEMVDIGAAVKPDST 219
Database: Non-redundant SwissProt sequences
Posted date: Jul 11, 2001 9:18 PM
Number of letters in database: 36,177,519
Number of sequences in database: 99,527
Lambda K H
0.318 0.150 0.454
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,799
Number of Sequences: 99527
Number of extensions: 291675
Number of successful extensions: 832
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 40
length of query: 73
length of database: 36,177,519
effective HSP length: 49
effective length of query: 24
effective length of database: 31,300,696
effective search space: 751216704
effective search space used: 751216704
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)
