T-COFFEE, Version_8.29(Wed Feb 24 20:33:06 WEST 2010)
Cedric Notredame
CPU TIME:1 sec.
SCORE=92
*
BAD AVG GOOD
*
gpd1yeast : 93
gpdadrome : 93
gpdhuman : 93
gpdamouse : 93
gpdarabit : 93
gpdacaeel : 93
gpdleish : 93
gpdtrybb : 93
gpdaecoli : 93
gpdahaein : 93
gpdabacsu : 93
gpdpseu : 85
cons : 92
gpd1yeast MSAAADRLNLTSGHLNAGRKRSSSSVSLKAAEKPFKVTV
gpdadrome MAD---------------K---------------VNVCI
gpdhuman MAS---------------K----------------KVCI
gpdamouse A-G---------------K----------------KVCI
gpdarabit A-G---------------K----------------KVCI
gpdacaeel MSP---------------K----------------KVTI
gpdleish MSTKQH----SAKDELL---------------YLNKAVV
gpdtrybb MVSG-----------VT---------------YLKRGAV
gpdaecoli MNQ-----------------------------RNASMTV
gpdahaein MIT-----------------------------SQTPITV
gpdabacsu ---------------------------------MKKVTM
gpdpseu ---------------------------------MTSCC-
cons
gpd1yeast IGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEIN
gpdadrome VGSGNWGSAIAKIVGANAAALP-EFEERVTMFVYEELID
gpdhuman VGSGNWGSAIAKIVGGNAAQLA-QFDPRVTMWVFEEDIG
gpdamouse VGSGNWGSAIAKIVGSNAGRLA-HFDPRVTMWVFEEDIG
gpdarabit VGSGDWGSAIAKIVGGNAAQLA-QFDPRVTMWVFEEDIG
gpdacaeel IGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVN
gpdleish FGSGAFGTALAMVLSKKCRE--------VCVWHMNEE--
gpdtrybb FGSGAFGTALACVLAKKCES--------VSVWHMNAN--
gpdaecoli IGAGSYGTALAITLARNGHE--------VVLWGHDPE--
gpdahaein LGAGSYGTALAITFSRNGSP--------THLWGHNPA--
gpdabacsu LGAGSWGTALALVLTDNGNE--------VCVWAHRAD--
gpdpseu -G--------AVAKTR---------------WRNVPD--
cons * * :
gpd1yeast GEKLTEIINTRHQNVKYLPGITLPDNLVANPD----LID
gpdadrome GKKLTEIINETHENVKYLKGHKLPPNV-AVPD----LVE
gpdhuman GKKLTEIINTQHENVKYLPGHKLPPNVVAVPD----VVQ
gpdamouse GRKLTEIINTQHENVKYLPGHKLPPNVVAIPD----VVQ
gpdarabit GKKLTEIINTHQENVKYLPGHKLPPNVVAVPD----VVK
gpdacaeel GEKLSEVINNRHENIKYLPGKVLPNNVVAVTD----LVE
gpdleish ---EVRLVNEKRENVLFLKGVQLASNITFTSD----VEK
gpdtrybb ---EARVVNQKHENVYFLPGAPLPANLTFTAD----AEE
gpdaecoli ---HIATLERDRCNAAFLPDVPFPDTLHLESD----LAT
gpdahaein ---HIAQMQTERQNYRFLPDVIFPEDLHLESN----LAQ
gpdabacsu ---LIHQINELHENKDYLPNVKLSTSIKGTTD----MKE
gpdpseu ---PC-------ENTAYLPGHPLPAALKATADFSLALDH
cons * :* . :. : .:
gpd1yeast SVKDVDIIVFNIPHQFLPRICSQLKGHVDSHV-----RA
gpdadrome AAKNADILIFVVPHQFIPNFCKQLLGKIKPNA-----IA
gpdhuman AAEDADILIFVVPHQFIGKICDQLKGHLKANP-----TG
gpdamouse AATGADILVFVVPHQFIGKICDQLKGHLKANT-----IG
gpdarabit AAADADILIFVVPHQFIGKICDEIKGHLKANA-----IG
gpdacaeel SCEGSNVLVFVVPHQFVKGICEKLVGKIPADT-----QA
gpdleish AYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPV
gpdtrybb CAKGAEIVLFVIPTQFLRGFLQKNSHILRNHVVSRNVPV
gpdaecoli ALAASRNILVVVPSHVFGEVLRQIKPLMRPDA-----RL
gpdahaein AMEYSQDILIVVPSHAFGEILIKIKPHLKAHH-----RL
gpdabacsu AVSDADVIIVAVPTKAIREVLRQAVPFITKKA-----VF
gpdpseu VAQGDGLLIAATSVAGLRPLAQQLQGKAIP-------NL
cons :: . . . :
gpd1yeast ISCLKGFEVGAK-GVQLLSSYITEELG----IQCGALSG
gpdadrome ISLIKGFDKAEGGGIDLISHIITR-------IPCAVLMG
gpdhuman ISLIKGVDEGPN-GLKLISEVIGERLG----IPMSVLMG
gpdamouse ISLIKGVDEGPN-GLKLISEVIGERLG----IPMSVLMG
gpdarabit ISLIKGVNEGPK-GLKLISEVIGEHLG----IPMSVLMG
gpdacaeel ISLIKGVSTEKRGGLKLISEEIKEILK----IEVSVLMG
gpdleish LVCTKGIERS---TLKFPAEIIGEFLPS---PLLSVLAG
gpdtrybb VMCSKGIERS---SLLFPAQILEEFLPN---YPIGVIAG
gpdaecoli VWATKGLEAE---TGRLLQDVAREALGD--QIPLAVISG
gpdahaein IWATKGLERN---TGRLLQTVVEEQLGT--QYPLAVLSG
gpdabacsu VHVSKGIEPD---SLLRISEIMEIELPSDVRRDIVVLSG
gpdpseu VWLCKGLEEG---SGLLPHQVVREVLGT--QLPAGVLSG
cons : **.. .: *
gpd1yeast ANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKA
gpdadrome ANLANEVAEGNFCETTIGCTDKKY---------GKVLRD
gpdhuman ANIASEVADEKFCETTIGCKDPAQ---------GQLLKE
gpdamouse ANIASEVAEEKFCETTIGCKDPAQ---------GQLLKD
gpdarabit ANIASEVADEKFCETTIGCKDQAQ---------GQLLKQ
gpdacaeel ANLAPEVANDNFCEATIGCKRKAED--------GPLLKK
gpdleish PSFAIEVATGVFTCVSIASADINV---------ARRLQR
gpdtrybb PSFAIEVAKGMLTNVCTAAADINM---------ARKIQR
gpdaecoli PTFAKELAAGLPTAISLASTDQTF---------ADDLQQ
gpdahaein PTFAKELAQGLPSAITLAANNEQF---------AREFQS
gpdabacsu PSHAEEVGLRHATTVTASSKSMRA---------AEEVQD
gpdpseu PSFAQEVAQGLPCALVIAAEDAAL---------RELVVA
cons .. * *:. . .
gpd1yeast LFH-R-PYFHVSVIEDVAGISICGALKNVVALGCGFVEG
gpdadrome LFQ-A-NHFRVVVVDDADAVEVCGALKNIVACGAGFVDG
gpdhuman LMQ-T-PNFRITVVQEVDTVEICGALKNVVAVGAGFCDG
gpdamouse LMQ-T-PNFRITVVQEVDTVEICGALKNIVAVGAGFCDG
gpdarabit LMQ-T-PNFRIVVTQEVNTVEICGALKDLVAVGAGFCDG
gpdacaeel LFH-T-DNFRINVVEDAHTVELCGALKNVVACAAGFTDG
gpdleish IMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANG
gpdtrybb IMTTSDGSFRCWATTDVIGCEIASAMKNVLAIASGALKG
gpdaecoli LLHCG-KSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDG
gpdahaein RIHCS-KGFRVYINSDMTGVQLGGAIKNVIAIGAGISDG
gpdabacsu LFI-N-HNFRVYTNPDIIGVEIGGALKNIIALAAGITDG
gpdpseu AVH-G-PAIRVYSSDDVVGVEVGGAVKNILAIATGILDG
cons . : : .: .*:*:::* . * .*
gpd1yeast LGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQES
gpdadrome LKLGDNTKAAVIRLGLMEMIRFVDVFYPGS-KLSTFFES
gpdhuman LGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLES
gpdamouse LGFGDNTKAAVIRLGLMEMIAFAKLFCSGTVSSATFLES
gpdarabit IGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSPATFLES
gpdacaeel LGYGDNTKAAVIRLGLMETTKFVEHYYPGS-NLQTFFES
gpdleish LGMGLNARAALIMRGLLEIRDLTAAL--GG-DGSAVFGL
gpdtrybb LGTENNARAALISRGLLEIRDLTLAL--GG-TGEAVFGL
gpdaecoli IGFGANARTALITRGLAEMSRLGAAL--GA-DPATFMGM
gpdahaein MGFGANARTALITRGIAEITRLGISL--GA-NTNTFMGM
gpdabacsu LGYGDNAKAALITRGLAEIARLGTKM--GG-NPLTFSGL
gpdpseu MSLGLNARAALITRGLAEITRLGIAL--GA-RAETFMGL
cons : *: :*: *: * :
gpd1yeast AGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELL
gpdadrome CGVADLITTY-------RRVSEAFVTSGKTIEELEKEML
gpdhuman CGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELL
gpdamouse CGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKEML
gpdarabit CGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKEML
gpdacaeel CGIADLITTCYG--GRNRKVCEAFVKTGKSMAEVEKELL
gpdleish AGLGDLQLTCSSELSRNFTVGKKL-GKGLPIEEIQRT--
gpdtrybb PGLGDLLLTCSSELSRNFTVGMKL-GQGISLEEIKRT--
gpdaecoli AGLGDLVLTCTDNQSRNRRFGMML-GQGMDVQSAQEK--
gpdahaein SGLGDLVLTCTDNQSRNRRFGLML-GKGLDAQMAMEN--
gpdabacsu TGVGDLIVTCTSVHSRNWRAGNLL-GKGYKLEDVLEE--
gpdpseu AGVGDLILTCTGDLSRNRKVGLGL-AQGKPLETIVTE--
cons *:.** * : *
gpd1yeast NGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYN
gpdadrome NGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICTN
gpdhuman NGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYE
gpdamouse NGQKLQGPQTARELHSILQHKGLVDKFPLFTAVYKVCYE
gpdarabit NGQKLQGPETARELHSILQHKGLVDWFPLFMAVYKVCYQ
gpdacaeel NGQSAQGPLTAEEVYLMMHKTGLDAKFPLFTAVHKICAG
gpdleish SKAVAEGVATADPLMRLAKQLK--VKMPLCHQIYEIVYK
gpdtrybb SKAVAEGVATAEPLERLAKKHN--ADLPICHEVYNVLYA
gpdaecoli IGQVVEGYRNTKEVRELAHRFG--VEMPITEEIYQVLYC
gpdahaein IGQVVEGFYNTKEAYLLAQRQG--VEMPITEQIYQMLFC
gpdabacsu MGMVVEGVRTTKAAYQLSKKYD--VKMPITEALHQVLFN
gpdpseu LGHVAEGVRCAAAVRNLAQQLQ--IEMPITNAVAGILFD
cons :* . :*: : :
gpd1yeast NYPMKN-LPDMIEELDLHE---------------D
gpdadrome QLKPND-LIDCIRNHPEHMDTSIMP------SPKL
gpdhuman GQPVGE-FIHCLQNHPEH----------------M
gpdamouse GQPVGE-FIRCLQNHPEH----------------M
gpdarabit GQPVGE-FIRCLQNHPEH----------------M
gpdacaeel EMKPAE-LVDCLRNHPEH----------------M
gpdleish KKNPRDALADLLSCGLQDEGLPPLFKRSASTPSKL
gpdtrybb NGCAKRSFKKLNSCKLADEGLPALP-----RTSKM
gpdaecoli GKNAREAALTLLGRARKDER------------SSH
gpdahaein GKSAQDVAISLLGRACKG----------------E
gpdabacsu GQKVETAVESLMARGKTHEMEDLVNTF---ENQVK
gpdpseu GHSPRATVEQLLARHPRDESI----------SASP
cons