Multipe Sequence Alignments Post-Processing:
Extracting Blocks, Selecting Sequences and Decreasing Redundancy




  1. t_coffee -other_pg seq_reformat -in full_dataset.aln -action +trim _aln_n10
  2. t_coffee -other_pg seq_reformat -in full_dataset.aln -in2 keep.fasta -action +trim _aln_n10
  3. t_coffee -other_pg seq_reformat -in full_dataset.aln -action +trim _aln_%%50
  4. t_coffee -other_pg seq_reformat -in full_dataset.aln -action +trim _aln_%%50 -output sim

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