2nd PROSITE Workshop,
27-29 June 2001
IGS-Marseille
Program
Wed 27
Time
Title
Speaker
Location
8:45-9:00
Welcome Address
Cedric Notredame (IGS-Marseille)
Salle Conferences IBSM
9:00-9:30
Combining Structures and Sequences Within a Multiple Sequence Alignment
Cedric Notredame (IGS-Marseille)
Salle Conferences IBSM
9:30-10:00
Real: A new strategy for the design of functional signatures in protein sequences(abstract)
Chantal Abergel (IGS-Marseille)
Salle Conferences IBSM
10:00-10:30
A case study: updating SH2
Philip Bucher (SIB-Lausanne)
Salle Conferences IBSM
10:30-11:00
Bacterial Genome Analysis
Hiroyuki Ogata (IGS-Marseille)
Salle Conferences IBSM
11:00-11:30
Classification des Zn fingers, situation dans PROSITE et problemes techniques pour les identifier.
Nicolas Hulo (SIB-Geneve)
Salle Conferences IBSM
11:45-13:15
Lunch: IGS Campus
13:30-14:30
Good profiles and what they are good for (abstract)
Philipp Bucher (SIB-Lausanne)
Salle Conferences GLM
14:30-15:30
La base ProDom de familles de domaines protéiques, au présent et au futur
Daniel Kahn (INRA-Toulouse)
Salle Conferences GLM
15:30-16:30
Utilisation et Developpement de Prosite dans le cadre de l'annotation automatique de proteomes microbiens
Amos Bairoch (SIB-Geneve)
Salle Conferences GLM
16:30-17:30
Beyond the limit of the traditional ("bourgeois") domain shuffling view: some alternative ("situationist") protein evolution models(abstract)
Jean Michel Claverie (IGS-Marseille)
Salle Conferences GLM
Thurs 28
Time
Title
Speaker
Location
9:00-9:30
From QDOC to TIBS: a successful report
Laurent Falquet (SIB-Lausanne)
Salle Conferences IBSM
9:30-10:00
Definition of enzyme-specific profiles for metabolic pathway prediction
Clothilde Renard (INRA-Toulouse)
Salle Conferences IBSM
10:00-10:30
The elusive roles of bacterial glutathione S-transferases: new lessons from genomes
Marco Pagni (SIB-Lausanne)
Salle Conferences IBSM
11:00-11:30
Projects Introduction
Salle Conferences IBSM
11:45-13:15
Lunch: CNRS Campus
14:00-18:00
Workshop
Linux Room: University
Friday 29
Time
Title
Speaker
Location
9:00-12:00
Workshop
Linux room: University
11:45-13:15
Lunch: University Campus
14:00-18:00
Workshop: Summary and Discussions
Linux room: University
Saturday 30
Cruise to Friouls's Island,
Meeting at 9:00 am, Metro Station "le vieux Port", Fish Market Exit
Sunday 1
Visit of Marseille
Meeting at 9:00 am, Metro Station "le vieux Port", Fish Market Exit
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2nd PROSITE Workshop,
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Program
| Time | Title | Speaker | Location |
| 8:45-9:00 | Welcome Address | Cedric Notredame (IGS-Marseille) | Salle Conferences IBSM |
| 9:00-9:30 | Combining Structures and Sequences Within a Multiple Sequence Alignment | Cedric Notredame (IGS-Marseille) | Salle Conferences IBSM |
| 9:30-10:00 | Real: A new strategy for the design of functional signatures in protein sequences(abstract) | Chantal Abergel (IGS-Marseille) | Salle Conferences IBSM |
| 10:00-10:30 | A case study: updating SH2 | Philip Bucher (SIB-Lausanne) | Salle Conferences IBSM |
| 10:30-11:00 | Bacterial Genome Analysis | Hiroyuki Ogata (IGS-Marseille) | Salle Conferences IBSM |
| 11:00-11:30 | Classification des Zn fingers, situation dans PROSITE et problemes techniques pour les identifier. | Nicolas Hulo (SIB-Geneve) | Salle Conferences IBSM |
| 11:45-13:15 | Lunch: IGS Campus | ||
| 13:30-14:30 | Good profiles and what they are good for (abstract) | Philipp Bucher (SIB-Lausanne) | Salle Conferences GLM |
| 14:30-15:30 | La base ProDom de familles de domaines protéiques, au présent et au futur | Daniel Kahn (INRA-Toulouse) | Salle Conferences GLM |
| 15:30-16:30 | Utilisation et Developpement de Prosite dans le cadre de l'annotation automatique de proteomes microbiens | Amos Bairoch (SIB-Geneve) | Salle Conferences GLM |
| 16:30-17:30 | Beyond the limit of the traditional ("bourgeois") domain shuffling view: some alternative ("situationist") protein evolution models(abstract) | Jean Michel Claverie (IGS-Marseille) | Salle Conferences GLM |
| Time | Title | Speaker | Location |
| 9:00-9:30 | From QDOC to TIBS: a successful report | Laurent Falquet (SIB-Lausanne) | Salle Conferences IBSM |
| 9:30-10:00 | Definition of enzyme-specific profiles for metabolic pathway prediction | Clothilde Renard (INRA-Toulouse) | Salle Conferences IBSM |
| 10:00-10:30 | The elusive roles of bacterial glutathione S-transferases: new lessons from genomes | Marco Pagni (SIB-Lausanne) | Salle Conferences IBSM |
| 11:00-11:30 | Projects Introduction | Salle Conferences IBSM | |
| 11:45-13:15 | Lunch: CNRS Campus | ||
| 14:00-18:00 | Workshop |
Linux Room: University | |
| Time | Title | Speaker | Location |
| 9:00-12:00 | Workshop |
Linux room: University | |
| 11:45-13:15 | Lunch: University Campus | ||
| 14:00-18:00 | Workshop: Summary and Discussions |
Linux room: University | |
| Cruise to Friouls's Island, Meeting at 9:00 am, Metro Station "le vieux Port", Fish Market Exit |
| Visit of Marseille Meeting at 9:00 am, Metro Station "le vieux Port", Fish Market Exit |